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Registros recuperados: 425
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Detection of Type 1 Ostreid Herpes variant (OsHV-1 mu var) with no associated mortality in French-origin Pacific cupped oyster Crassostrea gigas farmed in Italy ArchiMer
Dundon, William G.; Arzul, Isabelle; Omnes, Emmanuelle; Robert, Maeva; Magnabosco, Cristian; Zambon, Michela; Gennari, Lorenzo; Toffan, Anna; Terregino, Calogero; Capua, Ilaria; Arcangeli, Giuseppe.
In April 2010, the sampling of juvenile Pacific cupped oysters originating from France was undertaken from a farm located off the coast of the Marche region in Italy. Samples were sent to the national reference laboratory for mollusc diseases for bacteriological, histological, electron microscopical and molecular analysis. Classical and Real-Time PCR indicated the presence of the microvariant (OsHV-1 mu var) of Type 1 Ostreid Herpes virus (OsHV-1) despite the absence of clinical and pathological signs normally associated with the presence of this variant. Further molecular and sequencing analysis revealed the presence of OsHV-1 par and OsHV-1 DNA in one oyster indicating that simultaneous detection of both viruses is possible. This is the first report of...
Tipo: Text Palavras-chave: Pacific cupped oyster; Ostreid Herpes virus 1 mu var; PCR; Italy.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00035/14585/11968.pdf
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Detection of virulence genes in Salmonella Enteritidis isolated from different sources BJM
Oliveira,Sílvia Dias de; Rodenbusch,Carla Rosane; Michael,Geovana B.; Cardoso,Marisa I.R.; Canal,Cláudio Wageck; Brandelli,Adriano.
The presence of three virulence genes, invA, spvR, and spvC, was determined in Salmonella Enteritidis isolated from poultry, pigs, humans and food. All isolates were positive for the invA gene, with 91.2% being positive for spvR and 90.2% for spvC. There was no significant difference in the prevalence of the virulence genes between isolates from different sources. The results indicate that there is a putative high virulence potential for the S. Enteritidis isolates characterized.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Salmonella Enteritidis; Virulence; Spv; PCR.
Ano: 2003 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822003000500042
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Determinación de la dieta del jaguar (Panthera onca) y puma (Puma concolor) en el municipio de Tamasopo, San Luis Potosí Colegio de Postgraduados
Rueda Zozaya, Rocío del Pilar.
En México se encuentran los felinos más grandes de América, el puma (Puma concolor) y el jaguar (Panthera onca). Debido al incremento en las fronteras agropecuarias, el jaguar y el puma se encuentran en peligro de extinción en varias áreas de su distribución. Aunada a su situación crítica, su comportamiento elusivo y críptico dificulta aún más la accesibilidad para realizar investigación acerca de su etología, hábitos alimenticios y estimación de parámetros poblacionales. Por ello, se ha tenido la necesidad de recurrir a otros métodos de investigación no invasivos que eviten el manejo directo, uno de estos métodos es la recolección de excretas para identificar los componentes de su dieta, con esta información, se puede evaluar si realmente estos felinos...
Palavras-chave: Panthera onca; Puma concolor; Dieta; PCR; Diet; Ganadería; Fauna silvestre; Maestría.
Ano: 2010 URL: http://hdl.handle.net/10521/76
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Determinación de la dieta del jaguar (Panthera onca) y puma (Puma concolor) en el municipio de Tamasopo, San Luis Potosí Colegio de Postgraduados
Rueda Zozaya, Rocío del Pilar.
En México se encuentran los felinos más grandes de América, el puma (Puma concolor) y el jaguar (Panthera onca). Debido al incremento en las fronteras agropecuarias, el jaguar y el puma se encuentran en peligro de extinción en varias áreas de su distribución. Aunada a su situación crítica, su comportamiento elusivo y críptico dificulta aún más la accesibilidad para realizar investigación acerca de su etología, hábitos alimenticios y estimación de parámetros poblacionales. Por ello, se ha tenido la necesidad de recurrir a otros métodos de investigación no invasivos que eviten el manejo directo, uno de estos métodos es la recolección de excretas para identificar los componentes de su dieta, con esta información, se puede evaluar si realmente estos felinos...
Palavras-chave: Panthera onca; Puma concolor; Dieta; PCR; Diet; Ganadería; Fauna silvestre; Maestría.
Ano: 2010 URL: http://hdl.handle.net/10521/76
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Development of a scar marker for Pierce's Disease strains of Xylella fastidiosa Trop. Plant Pathol.
Travensolo,Regiane F.; Ciapina,Luciane P.; Lemos,Eliana G. M..
The objective of this research was to develop a primer for a polymerase chain reaction specific for Xylella fastidiosa strains that cause Pierce's Disease (PD) in grapes (Vitis vinifera). The DNA amplification of 23 different strains of X. fastidiosa, using a set of primers REP1-R (5'-IIIICGICGIATCCIGGC-3') and REP 2 (5'-ICGICTTATCIGGCCTAC-3') using the following program: 94 ºC/2 min; 35 X (94 ºC/1 min, 45 ºC/1 min and 72 ºC/1 min and 30 s) 72 ºC/5 min, produced a fragment of 630 bp that differentiated the strains that cause disease in grapes from the other strains. However, REP banding patterns could not be considered reliable for detection because the REP1-R and REP 2 primers correspond to repetitive sequences, which are found throughout the bacterial...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Oligonucleotide; Polymerase chain reaction; PCR; REP-PCR.
Ano: 2005 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-41582005000200002
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Development of new simple sequence repeat markers for pearl millet Open Agri
Yadav, O.P..
Palavras-chave: Locus; DNA; Genetic structures; PCR; Millets; Polymorphism; Genomes; Biotechnology; Breeds (animals); Melting.
Ano: 2007 URL: http://agropedia.iitk.ac.in/openaccess/?q=node/3309
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Diagnosis of Babesia caballi Infection in Horses by Polymerase Chain Reaction OAK
Xuan, Xuenan; Igarashi, Ikuo; Avarzed, A.; Ikadai, Hiromi; Inoue, Noboru; Nagasawa, Hideyuki; Fujisaki, Kozo; Toyoda, Yutaka; Suzuki, Naoyoshi; Mikami, Takeshi; 玄, 学南; 五十嵐, 郁男; 井上, 昇.
A set of primers were designed according to the published sequence of the gene encoding a rhoptry protein of Babesia caballi, and used to amplify parasite DNA from the blood samples obtained from carrier horses by polymerase chain reaction(PCR)method.The PCR method was sensitive enough to detect parasite DNA from 2.5 μl blood sample with a parasitemia of 0.000001%. The PCR method was compared with fluorescent antibody test(IFAT) in order to evaluate the diagnosis effciency for B. caball infection in horses. Of 142 field samples from Mongolia, 28(20%) and 96(69%)samples were identified positively by PCR and IFAT, respectively. Although the sensitivity of PCR was lower than IFAT, it was noted that the 5 IFAT-negative samples were PCR-positive, suggesting...
Palavras-chave: Babesia caballi; PCR; IFAT.
Ano: 1998 URL: http://ir.obihiro.ac.jp/dspace/handle/10322/281
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Diagnosis of Brucella ovis infection by serology and PCR in urine samples from naturally infected rams in the state of Piauí Arq. Bras. Med. Vet. Zootec.
Costa,E.A.; Sant'Ana,F.M; Carvalho,C.J.S.; Moustacas,V.S.; Silva,S.M.M.S.; Paixão,T.A.; Santos,R.L..
A brucelose ovina causada pela Brucella ovis é uma doença reprodutiva de carneiros caracterizada por epididimite, orquite, com consequente diminuição da fertilidade e prejuízos econômicos significativos. O presente trabalho teve por objetivo avaliar a aplicabilidade da técnica de PCR como um método de diagnóstico em campo, comparado-a com a técnica de IDGA. Foram coletadas amostras de urina e soro de 90 carneiros oriundos de 31 rebanhos localizados no Estado do Piauí. Quatro das 31 (12,9%) propriedades avaliadas apresentaram animais positivos. Dezoito (20%) amostras de urina foram positivas pela PCR, enquanto o método de IDGA identificou 16 (17,8%) carneiros soropositivos. Embora os métodos tenham apresentado concordância baixa na estatística Kappa...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Brucella ovis; Sheep; Diagnosis; PCR; AGID.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-09352012000300029
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Diagnosis of Gallibacterium Anatis in Layers: First Report in Turkey Rev. Bras. Ciênc. Avic.
Yaman,S; Sahan Yapicier,O.
ABSTRACT Gallibacterium anatis, a member of the Pasteurellaceae family, leads to decrease in egg-production, animal welfare and increase in mortality. This study aimed to diagnose G. Anatis, which caused economic losses in laying hens by using conventional and molecular techniques. In this study, G. anatis was examined from a total of 200 dead chicken tissues (heart, liver, lung, spleen and trachea) in laying hen farms that observed a decrease in egg production with respiratory system infection. Conventional methods based on colony morphology, sugar fermentation tests and hemolytic properties and molecular conformation using 16S rRNA-23S rRNA specific primers were performed to identify G. anatis. G. anatis was isolated in 20 (10%) of the examined samples...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Gallibacterium anatis; Isolation and identification; Layers; PCR.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2019000300307
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Diagnosis of Giardia infections by PCR-based methods in children of an endemic area J. Venom. Anim. Toxins incl. Trop. Dis.
David,EB; Coradi,ST; Oliveira-Sequeira,TCG; Ribolla,PEM; Katagiri,S; Guimarães,S.
The present study was designed to estimate the prevalence of Giardia infection in preschool- and school-aged children living in an endemic area. Fecal samples from 573 children were processed by zinc sulfate centrifugal flotation, centrifugal sedimentation (using a commercial device for fecal concentration - TF-Test kit®) and polymerase chain reaction (PCR)-based methods. Of the stool samples assessed, 277 (48.3%) were positive for intestinal parasites and/or commensal protozoa. Centrifugal flotation presented the highest diagnostic sensitivity for Giardia infections. The kappa index revealed that both coproparasitological techniques closely agreed on the Giardia diagnosis (86%) versus satisfactory (72%) and poor (35%) concordances for commensal protozoan...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Giardia duodenalis; Children; Diagnosis; PCR.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1678-91992011000200012
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Diagnosis of human papillomatosis by polymerase chain reaction in cases of divergence between results of hybrid capture and papanicolaou cytology BJID
Novaes,Luiz Carlos Garcez; Novaes,Maria Rita Carvalho Garbi; Simões-Barbosa,Augusto.
As various types of human papillomavirus (HPV) are involved in the pathogenesis of cervical cancer, correct diagnosis is of fundamental importance for screening programs. We evaluated the divergence of results between Papanicolaou cytology and hybrid capture by PCR detection of HPV DNA . A transversal study was conducted on 70 women attending private gynecological clinics in Brasilia, Brazil. PCRs were conducted with specific primers for general and high-risk HPV DNA. Based on the PCR results, hybrid capture was a superior diagnostic technique. When Papanicolaou was compared with the molecular biology methods, it was found that a positive Papanicolaou result does not necessarily indicate the presence of HPV. The agreement between PCR and hybrid capture...
Tipo: Info:eu-repo/semantics/article Palavras-chave: HPV; Diagnosis; Hybrid capture; PCR.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1413-86702006000300003
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Diagnosis of neonatal group B Streptococcus sepsis by nested-PCR of residual urine samples BJM
Cezarino,Bruno Nicolino; Yamamoto,Lidia; Del Negro,Gilda Maria Barbaro; Rocha,Daisy; Okay,Thelma Suely.
Group B streptococcus (GBS) remains the most common cause of early-onset sepsis in newborns. Laboratory gold-standard, broth culture methods are highly specific, but lack sensitivity. The aim of this study was to validate a nested-PCR and to determine whether residue volumes of urine samples obtained by non invasive, non sterile methods could be used to confirm neonatal GBS sepsis. The nested-PCR was performed with primers of the major GBS surface antigen. Unavailability of biological samples to perform life supporting exams, as well as others to elucidate the etiology of infections is a frequent problem concerning newborn patients. Nevertheless, we decided to include cases according to strict criteria: newborns had to present with signs and symptoms...
Tipo: Info:eu-repo/semantics/article Palavras-chave: GBS; Neonatal sepsis; Early-onset neonatal sepsis; Neonatal infection; PCR; Nested-PCR.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822008000100005
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Diagnosis of the pulmonary tuberculosis by polymerase chain reaction: a comparative study between HIV - positive and - negative individuals BJM
Silva,Rosemeri Maurici da; Machado,Tairone; Bazzo,Maria Luiza.
This study was performed to assess the efficiency of polymerase chain reaction (PCR) directly from sputum for the diagnosis of pulmonary tuberculosis by comparison between HIV-positive and HIV-negative individuals. Sputum samples were collected from hospitalized patients admitted with a clinical diagnosis of pulmonary tuberculosis, and subjected to smear microscopy, culture on LJ medium and detection of M. tuberculosis by PCR. Sensitivity, specificity, and predictive values (positive and negative) were calculated using smear and/or culture at day 42 as the gold standard, by comparing the yield in HIV-positive and HIV-negative individuals. Regardless of serostatus, the technique's yield had 62% sensitivity, 70% specificity, 79% positive predictive value,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Tuberculosis; HIV; PCR; Sputum.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822012000100030
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Diagnóstico de leishmaniose visceral canina em animais do Centro de Controle de Zoonoses da Bahia MV&Z
Carvalho, Fábio Santos; Rocha, Josiane Moreira; Wenceslau, Amauri Arias; Oliveira, Haniel Cedraz de; Santos, Ivanildo dos Anjos; Gross, Eduardo.
A Bahia é o estado da região Nordeste com maior número de registros de leishmaniose em humanos.Os cães também podem se infectar e tem importante papel na manutenção da doença no ambiente urbano. Sendo assim, objetivou-se investigar a ocorrência de leishmaniose visceral canina em animais das unidades de Centro de Controle de Zoonoses (CCZ) da Bahia utilizando técnicas sorológicas e moleculares. Foram examinados 100 cães dos CCZ dos municípios Barreiras, Eunápolis, Ilhéus, Itabuna e Feira de Santana. Após exame clínico dos animais coletou-se 10 mL de sangue da veia jugular para avaliação hematológica, extração de DNA e obtenção de soro. O DNA genômico foi extraído utilizando-se fenol:clorofórmio:álcool isoamilico (25:24:1). O diagnóstico sorológico foi...
Tipo: Info:eu-repo/semantics/article Palavras-chave: L. infantum; ELISA; PCR; Cães.
Ano: 2015 URL: http://www.revistamvez-crmvsp.com.br/index.php/recmvz/article/view/25304
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DIAGNÓSTICO MOLECULAR DE LA MARCHITEZ BACTERIANA Rev. Protección Veg.
Iglesia,Aleika; Alvarez,Elba; Martínez,Yamila; García,A.
La marchitez bacteriana causada por Ralstonia solanacearum, es una de las enfermedades más importante que afecta a una amplia gama de cultivos en las regiones tropicales y subtropicales. En Cuba esta enfermedad se encuentra bajo estrictas medidas de cuarentena, sin embargo el riesgo de entrada crece cada año debido a la importación de material vegetal procedente de zonas de altos niveles de infestación. En este trabajo se introduce y desarrolla el uso de la reacción en cadena de la polimerasa (PCR) para la detección y confirmación de R. solanacearum en materiales importados, así como en la vigilancia de la enfermedad en el sistema nacional de sanidad vegetal. La metodología utilizada facilitó la detección de R. solanacearum en cultivos de células hasta...
Tipo: Journal article Palavras-chave: Cuarentena; Diagnóstico molecular; Ralstonia solanacearum; PCR.
Ano: 2008 URL: http://scielo.sld.cu/scielo.php?script=sci_arttext&pid=S1010-27522008000200002
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Diagnóstico molecular e parasitológico de Ehrlichia Canis em cães no município de Ilhéus-BA MV&Z
Rocha, Josiane Moreira; Carvalho, Fabio Santos; Oliveira, Haniel Cedraz de; Munhoz, Alexandre Dias; Wenceslau, Amauri Arias.
Objetivou-se diagnosticar Erlichia canis com o emprego de dois métodos: i) molecular (PCR) e; ii) parasitológico (imprint em lâmina). Para tanto, foram selecionados cães com alterações clínicas, hematológicas e bioquímicas (febre, petéquias, alterações de linfonodos periféricos, apatia, trombocitopenia, anemia e pancitopenia e presença de carrapatos). Foram coletadas amostras de 10ml de sangue de 287 cães de seis bairros do município de Ilhéus, Bahia. Foi realizado o esfregaço de sangue de ponta de orelha em lâminas coradas por kit Panótico rápido, hemograma completo, realizado em contador automático ABCVet (Animal Blood Counter) utilizando kit ABX Vetpack (HURIBA). Parte do sangue foi centrifugado para obtenção do soro e verificação dos níveis de...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Erliquiose; PCR; Cão.
Ano: 2013 URL: http://www.revistamvez-crmvsp.com.br/index.php/recmvz/article/view/21342
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Diferenciação específica entre Taenia saginata e Taenia solium por ensaio de PCR e duplex-PCR Ciência Rural
Jardim,Eurione Antônio Garcia da Veiga; Linhares,Guido Fontgalland Coelho; Torres,Fernando Araripe Gonçalves; Araújo,José Luiz de Barros; Barbosa,Silvia Minharro.
Este estudo teve como objetivo a padronização de protocolos e a seleção de novos primers para a identificação espécie-específica de Taenia saginata e Taenia solium através da reação em cadeia da polimerase (PCR) e duplex-PCR. Inicialmente, foram recuperadas seqüências depositadas no GenBank (acesso n° AB020399 para T. saginata e n° AB020395 para T. solium) referentes ao gene da subunidade maior do ribossomo (LSU RNAr) de tenídeos. A partir do alinhamento das seqüências, um primer genérico denominado TBR-3 (5'-ggcttgtttgaatggtttgacg- 3') foi selecionado de região conservada e, de diferentes regiões semi-conservadas, os primers específicos TBR-4 para T. saginata (5'-cgactcatgaagataaacaaggt-3') e TBR-5 (5'-cggtcgaacagaccataaatct-3') e TBR-6...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Taenia saginata; Taenia solium; Teníase; Cisticercose; PCR; Duplex-PCR.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782006000100025
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Direct matrix-assisted laser desorption ionization time-of-flight mass spectrometry and real-time PCR in a combined protocol for diagnosis of bloodstream infections: a turnaround time approach BJID
Quiles,Milene Gonçalves; Boettger,Bruno Cruz; Inoue,Fernanda Matsiko; Monteiro,Jussimara; Santos,Daniel Wagner; Ponzio,Vinicius; Carlesse,Fabianne; Cappellano,Paola; Carvalhaes,Cecilia Godoy; Pignatari,Antonio Carlos Campos.
ABSTRACT Bloodstream infections (BSIs) are serious infections associated with high rates of morbidity and mortality. Every hour delay in initiation of an effective antibiotic increases mortality due to sepsis by 7%. Turnaround time (TAT) for conventional blood cultures takes 48 h, forcing physicians to streamline therapy by exposing patients to broad-spectrum antimicrobials. Our objective was (1) to evaluate the accuracy and TAT of an optimized workflow combining direct matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) and in-house real-time polymerase chain reaction (PCR) for bacterial identification and antimicrobial resistance profiling directly from positive blood bottles for diagnosing bloodstream infections...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bloodstream infections; Molecular diagnosis; Molecular panels; PCR; Mass spectrometry.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1413-86702019000300164
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Discrimination of members of the Mycobacterium avium complex by polymerase chain reaction Rev. Microbiol.
Sircili,Marcelo Palma; Roxo,Eliana; Leão,Sylvia Cardoso.
Mycobacterium avium complex (MAC) species cannot be discriminated by the usual methods of biochemical identification of mycobacteria. This study showed that amplification by PCR of DT1 and DT6, two single copy sequences identified in the genome of M. avium serotype 2, the insertion sequence IS1245, found to be consistently present in M. avium strains and the heat-shock protein gene hsp65, followed by restriction polymorphism analysis, are rapid and accurate tests for the differentiation of the species M. avium, M. intracellulare, and M. scrofulaceum.
Tipo: Info:eu-repo/semantics/other Palavras-chave: Amplification; PCR; MAC; Mycobacterium; Identification.
Ano: 1999 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37141999000200011
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Discrimination of Shark species by simple PCR of 5S rDNA repeats Genet. Mol. Biol.
Pinhal,Danillo; Gadig,Otto BF; Wasko,Adriane P; Oliveira,Claudio; Ron,Ernesto; Foresti,Fausto; Martins,Cesar.
Sharks are suffering from intensive exploitation by worldwide fisheries leading to a severe decline in several populations in the last decades. The lack of biological data on a species-specific basis, associated with a k-strategist life history make it difficult to correctly manage and conserve these animals. The aim of the present study was to develop a DNA-based procedure to discriminate shark species by means of a rapid, low cost and easily applicable PCR analysis based on 5S rDNA repeat units amplification, in order to contribute conservation management of these animals. The generated agarose electrophoresis band patterns allowed to unequivocally distinguish eight shark species. The data showed for the first time that a simple PCR is able to...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chondrichthyes; PCR; Species identification; 5S rDNA; Sharks.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000200033
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